Author

Xuechu Zhao

University of Maryland, Baltimore

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:Drosophila· 1

Frequent Co-Authors

Amol Carl ShettyiD· 2 shared David A. RaskoiD· 2 shared Julie C. Dunning HotoppiD· 2 shared Lisa SadzewicziD· 2 shared Luke J. TalloniD· 2 shared Robin E. BromleyiD· 2 shared Adonis D’MelloiD· 1 shared Aimee D. PotteriD· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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2 shared papersGenomics

Amol Carl ShettyORCID

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3 papers

Recent·Most cited

Dual species transcriptomics reveals core metabolic and immunologic processes in the interaction between primary human neutrophils and Neisseria gonorrhoeae strains

Vonetta L. Edwards, Aimee D. Potter, Adonis D’Mello, Mary C. Gray, Amol Carl Shetty, Xuechu Zhao, Katherine M. Hill, Stephanie A. Ragland, Alison K. Criss, Hervé Tettelin

This study uses dual-species RNA-seq to analyze the transcriptional responses of Neisseria gonorrhoeae and human neutrophils during infection, revealing shared metabolic and immunologic processes.

bioRxiv · Feb 28, 2022 · PreprintGenomics

Comparison of long read sequencing technologies in resolving bacteria and fly genomes

Eric S. Tvedte, Mark T. Gasser, Benjamin C. Sparklin, Jane M. Michalski, Carl E. Hjelmen, J. Spencer Johnston, Xuechu Zhao, Robin E. Bromley, Luke J. Tallon, Lisa Sadzewicz, David A. Rasko, Julie C. Dunning Hotopp

This study compares PacBio and Oxford Nanopore long-read sequencing technologies for bacterial and fly genome assembly and methylation detection, finding no single technology outperforms others across all metrics.

G3 Genes Genomes Genetics · Mar 26, 2021Peer-reviewedGenomics

Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses

Matthew C. Chung, Laura E. Teigen, Hong Liu, Silvia Libro, Amol Carl Shetty, Nikhil Kumar, Xuechu Zhao, Robin E. Bromley, Luke J. Tallon, Lisa Sadzewicz, Claire M. Fraser, David A. Rasko, Scott G. Filler, Jeremy M. Foster, Michelle L. Michalski, , Julie C. Dunning Hotopp

This study compares enrichment techniques for multi-species RNA-Seq, finding that targeted enrichment with Agilent SureSelect improves read mapping to target organisms.

Scientific Reports · Aug 31, 2018Peer-reviewedGenomics