Author

Xuyang Shi

BGI Group (China)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:scATAC-seq· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Longqi LiuiD· 3 shared Xiumei LiniD· 3 shared Chang Xin LiuiD· 2 shared Chuanyu LiuiD· 2 shared Shanshan Duan· 2 shared Yue YuaniD· 2 shared Ao CheniD· 1 shared Bin Su· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersDevelopmental Biology

Longqi LiuORCID

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Author profile →

3 papers

Recent·Most cited

Decoding Immune Reconstitution Failure in People Living with HIV through Single-cell Genomics

Yuxing Wang, Shichen Yang, Yue Yuan, Mingli Zhu, Jun Chen, Yong Bai, Shanshan Duan, Xuyang Shi, Tianyu Lu, Zongxing Yang, Zhuoli Huang, Dingyan Yan, Yuhui Zheng, Xuanchi Zhou, Jun Yan, , Chuanyu Liu

This study uses single-cell multi-omics to analyze immune reconstitution failure in HIV patients, identifying genetic and epigenetic factors and developing a predictive model.

bioRxiv · May 23, 2026 · PreprintGenetics

Deciphering gene regulatory programs in mouse embryonic skin through single-cell multiomics analysis

Qiuting Deng, Pengfei Cai, Yingjie Luo, Zhongjin Zhang, Wen Ma, Zijie Huang, Xiaoya Chen, Shijie Hao, Weiguang Ma, Jiangshan Xu, Chunqing Wang, Mengnan Cheng, Xiumei Lin, Ru Zhou, Shanshan Duan, , Chuanyu Liu

The paper uses single-cell multiomics to study gene regulatory programs in mouse embryonic skin, identifying cis-regulatory elements and transcription factors involved in development.

Genome biology · Jul 1, 2025Peer-reviewedDevelopmental Biology

Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis

Chang Xin Liu, Rui Li, Young Li, Xiumei Lin, Kaichen Zhao, Qun Liu, Shuowen Wang, Xueqian Yang, Xuyang Shi, Yuting Ma, Chenyu Pei, Hui Wang, Wendai Bao, Junhou Hui, Tao Yang, , Longqi Liu

This study maps gene expression and developmental trajectories in zebrafish embryos using Stereo-seq and scRNA-seq, identifying spatial gene modules and signaling interactions.

Developmental Cell · May 1, 2022Peer-reviewedDevelopmental Biology