Author

Yi Xiong

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioengineering· 1 Cell Biology· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Organism:fungi (other)· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:clustering· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

Adriana Souza Torsoni· 1 shared Alexi I. Goranov· 1 shared Andreas LangeniD· 1 shared Andrew Condon· 1 shared Angela L. WeiiD· 1 shared Anna LipzeniD· 1 shared Balázs BálintiD· 1 shared Balyn W. ZaroiD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperCell Biology

Adriana Souza Torsoni

Author profile →

4 papers

Recent·Most cited

Biochemical mechanism of p-cresol removal by Thauera aminoaromatica S2

Oishi Sen, Pei-Hsin Wang, Prakit Saingam, Bruce J. Godfrey, Jonathan Himmelfarb, Yi Xiong, Chongle Pan, Mari K.H. Winkler

This study identifies a bacterial pathway for p-cresol removal and demonstrates its potential for gut-based detoxification.

bioRxiv · Mar 5, 2026 · PreprintBioengineering

Phenotypic landscape of a fungal meningitis pathogen reveals its unique biology

Michael J. Boucher, Sanjita Banerjee, Meenakshi B Joshi, Angela L. Wei, Matthew J. Nalley, Manning Y. Huang, Susan Lei, Massimiliano Ciranni, Andrew Condon, Andreas Langen, Thomas D. Goddard, Ippolito I Caradonna, Alexi I. Goranov, Christina M. Homer, Yasaman Mortensen, , Hiten D. Madhani

The paper characterizes the phenotypic landscape of Cryptococcus neoformans by analyzing gene deletions and their fitness under various conditions, revealing novel biological insights.

Cell · Oct 22, 2024Peer-reviewedMicrobiology

Transcriptomic atlas of mushroom development highlights an independent origin of complex multicellularity

Krisztina Krizsán, Éva Almási, Zsolt Merényi, Neha Sahu, Máté Virágh, Tamás Kószó, Stephen Mondo, Brigitta Kiss, Balázs Bálint, Ursula Kües, Kerrie Barry, Judit Cseklye, Botond Hegedűs, Bernard Henrissat, Jenifer Johnson, , László G. Nagy

This study constructs a transcriptomic atlas of mushroom development using six species and genome comparisons to identify conserved genes involved in complex multicellularity.

bioRxiv · Jun 18, 2018 · PreprintEvolutionary Biology

Hepatic NF-kB-inducing Kinase (NIK) Suppresses Liver Regeneration in Chronic Liver Disease

Yi Xiong, Adriana Souza Torsoni, Feihua Wu, Hong Shen, Yan Liu, Mark J Canet, M. Yatrik Shah, M. Bishr Omary, Yong Liu, Liangyou Rui

This study identifies NIK as a suppressor of hepatocyte replication in chronic liver disease, showing that its inactivation promotes liver regeneration.

bioRxiv · Dec 22, 2017 · PreprintCell Biology