Author

Yiyu Deng

University of Chicago

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioengineering· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Assay:imaging· 1 Research Focus:protein folding & dynamics· 1 Assay:protein sequence· 1

Frequent Co-Authors

Abinash Padhi· 2 shared Gabriel Mercado-Vasquez· 2 shared Savaş TayiD· 2 shared Aly Azeem KhaniD· 1 shared Bijentimala KeishamiD· 1 shared Erdal ToprakiD· 1 shared Huili Wang· 1 shared Jonathan M. Matthews· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersImmunology

Abinash Padhi

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Spatial proximity sequencing maps developmental dynamics in the germinal center

Huili Wang, Junjie Xia, Peer Mohamed Suhail Mujibur Rahman, Bijentimala Keisham, Abinash Padhi, Yiyu Deng, Yan Li, Luke F. Vistain, Sarah Kim, Gabriel Mercado-Vasquez, Aly Azeem Khan, Marcus R. Clark, Savaş Tay

This paper introduces Sprox-seq, a multi-omic technique that maps protein interactions and mRNA in human germinal centers, revealing distinct B cell maturation pathways and spatially-enriched immune regulatory complexes.

Cell · Jul 16, 2026Peer-reviewedImmunology

Massively multiplexed microfluidics maps combinatorial andsequential antibiotic responses in 3D

Yoon Jeong, Gabriel Mercado-Vasquez, Abinash Padhi, Yiyu Deng, Madhumitha Prakash, Jonathan M. Matthews, Sefika Ozcan, Erdal Toprak, Savaş Tay

The paper introduces a microfluidic system to study antibiotic responses in 3D cultures, revealing synergy, antagonism, and order-dependent drug efficacy.

bioRxiv · Oct 30, 2025 · PreprintBioengineering