Author

Yuan Sui

Aalto University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Organism:E. coli· 1 Approach:experimental assay· 1

Frequent Co-Authors

Andrew M. LowyiD· 1 shared Angelica E. RockiD· 1 shared Araceli Herrera Morales· 1 shared Casie S. KubotaiD· 1 shared Chelsea R. BottomleyiD· 1 shared Dannielle D. EngleiD· 1 shared Ellyse KuiD· 1 shared Emily Jacobs· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperCancer Biology

Andrew M. LowyORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Multimodal cellular context enables molecular phenotyping from single-molecule trajectories

Taras Redchuk, Lea Rehm, Yuan Sui, Jarno Mäkelä

The paper introduces MIST, a framework that integrates single-molecule trajectory data with cellular context to improve molecular phenotyping in E. coli.

bioRxiv · Nov 6, 2026 · PreprintBioinformatics

CA19-9 induces microenvironment remodeling in pancreatic ductal adenocarcinoma

Jasper Hsu, Hyemin Song, Satoshi Ogawa, Casie S. Kubota, Kristina L. Peck, Emily Jacobs, Lizmarie Garcia-Rivera, Jonathan Zhu, Yuan Sui, Woncheol Jung, Yang Dai, Jan C. Lumibao, Chelsea R. Bottomley, Kassidy Curtis, Mars Bau, , Dannielle D. Engle

This study identifies CA19-9's role in remodeling the PDAC tumor microenvironment by inducing IL1a and TGFb, leading to immunosuppressive changes that can be mitigated by blocking these factors.

bioRxiv · May 26, 2026 · PreprintCancer Biology