Author

Yumie Murata-Nakamura

University of Michigan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Molecular Biology· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:ChIP-seq· 2 Assay:DNA methylation· 2 Organism:mouse· 2 Research Focus:variant effect prediction· 2

Frequent Co-Authors

Robert S. PorteriD· 3 shared Shigeki IwaseiD· 3 shared Katherine M. BonefasiD· 2 shared Patricia Marie GarayiD· 2 shared Benoît LaurentiD· 1 shared Bing ReniD· 1 shared Bo O. ZhouiD· 1 shared Christina N. VallianatosiD· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersMolecular Biology

Robert S. PorterORCID

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3 papers

Recent·Most cited

Molecular BiologyCell ReportsPeer-reviewedJan 1, 2025

A neuron-specific microexon ablates the novel DNA-binding function of a histone H3K4me0 reader PHF21A

Robert S. Porter, Sojin An, María Cecilia Gavilán…·Shigeki Iwase

The paper identifies neuron-specific microexon splicing in chromatin regulators, showing that PHF21A loses DNA-binding function in neurons while retaining H3K4me0 recognition, contributing to brain development.

8 citations

humanChIP-seq

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Molecular BiologyGenome ResearchPeer-reviewedFeb 1, 2021

LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers

Saurabh Agarwal, Katherine M. Bonefas, Patricia Marie Garay…·Shigeki Iwase

This study shows LSD1/KDM1A suppresses primed enhancers in mESC by maintaining H3K4me1 levels and preventing aberrant enhancer activity.

32 citations

mouseChIP-seq

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GeneticsbioRxivPreprintAug 11, 2017

Induction of X-chromosome Inactivation by the Histone Demethylase SMCX/KDM5C

Srimonta Gayen, Emily T. Maclary, Yumie Murata-Nakamura…·Sundeep Kalantry

This study shows that SMCX/KDM5C, a histone demethylase, is required for X-inactivation in female mammals by inducing Xist RNA and silencing X-linked genes.

DOI 10.1101/175174

mousebulk RNA-seq

𝕏 PostBluesky