Author
Shigeki Iwase
University of MichiganORCID 0000-0003-2280-7422Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2017-2026 · peak 4/yrCo-Author Collaboration Network
10 top collaborators · 27 mutual co-author linksMutual co-authors in cluster
13 papers
Recent·Most cited
- NeuroscienceCell ReportsPeer-reviewed
Division of labor among H3K4 Methyltransferases Defines Distinct Facets of Homeostatic Plasticity
Takao Tsukahara, Saini Kethireddy, Katherine M. Bonefas…·Michael A. Sutton
This study identifies distinct roles of H3K4 methyltransferases in synaptic scaling, showing that different KMT2 subfamilies are required for upscaling or downscaling.
1 citation - Molecular BiologyCell ReportsPeer-reviewed
A neuron-specific microexon ablates the novel DNA-binding function of a histone H3K4me0 reader PHF21A
Robert S. Porter, Sojin An, María Cecilia Gavilán…·Shigeki Iwase
The paper identifies neuron-specific microexon splicing in chromatin regulators, showing that PHF21A loses DNA-binding function in neurons while retaining H3K4me0 recognition, contributing to brain development.
- Molecular BiologybioRxivPreprint
KDM5C is a sex-biased brake against germline gene expression programs in somatic lineages
Katherine M. Bonefas, Ilakkiya Venkatachalam, Shigeki Iwase
The paper investigates how KDM5C regulates germline gene repression in somatic cells, revealing sex-biased mechanisms and distinct regulatory classes of germline genes.
4 citations - GeneticsbioRxivPreprint
Regulation of Sex-biased Gene Expression by the Ancestral X-Y Chromosomal Gene Pair Kdm5c-Kdm5d
Rebecca M. Malcore, Milan Kumar Samanta, Sundeep Kalantry, Shigeki Iwase
The paper shows that the X-Y gene pair Kdm5c-Kdm5d regulates sex-biased gene expression in mouse ESCs, with loss of either gene neutralizing sex bias.
2 citations - BiochemistryJournal of Biological ChemistryPeer-reviewed
Asynchronous microexon splicing of LSD1 and PHF21A during neurodevelopment
Masayoshi Nagai, Robert S. Porter, Maxwell Miyasato…·Shigeki Iwase
The paper shows that PHF21A microexon expression precedes LSD1 microexon expression during neurodevelopment, leading to stepwise deactivation of the LSD1-PHF21A complex and unique gene-regulatory roles in neurons.
- GenomicsBMC BiologyPeer-reviewed
CRISPR-based Genome Editing of a Diurnal Rodent, Nile Grass Rat (Arvicanthis niloticus)
Huirong Xie, Katrina Linning‐Duffy, Elena Y. Demireva…·Lili Yan
The paper demonstrates successful CRISPR genome editing in the Nile grass rat, a diurnal rodent, establishing methods for reproductive and genetic manipulation.
1 citation - NeuroscienceTranslational PsychiatryPeer-reviewed
Alcohol-specific transcriptional dynamics of memory reconsolidation
Koral Goltseker, Patricia Marie Garay, Katherine M. Bonefas…·Segev Barak
The paper identifies alcohol-specific transcriptional changes during memory reconsolidation using mouse models and RNA-sequencing.
9 citations - Molecular BiologyGenome ResearchPeer-reviewed
LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers
Saurabh Agarwal, Katherine M. Bonefas, Patricia Marie Garay…·Shigeki Iwase
This study shows LSD1/KDM1A suppresses primed enhancers in mESC by maintaining H3K4me1 levels and preventing aberrant enhancer activity.
- NeuroscienceCell ReportsPeer-reviewed
RAI1 Regulates Activity-Dependent Nascent Transcription and Synaptic Scaling
Patricia Marie Garay, Alex Chen, Takao Tsukahara…·Shigeki Iwase
The paper profiles nascent RNA in neuronal cultures to show activity-dependent transcriptional changes and links RAI1 to synaptic scaling mechanisms.
29 citations - NeurosciencebioRxivPreprint
Small-hairpin RNAs cause target-independent microRNA dysregulation in neurons and elicit global transcriptomic changes
Rafi Kohen, Katherine T. Baldwin, Patricia Marie Garay…·Roman J. Giger
This study shows that shRNAs cause microRNA dysregulation and global transcriptomic changes in neurons, independent of their target.
3 citations - GeneticsCommunications BiologyPeer-reviewed
Mutually suppressive roles of KMT2A and KDM5C in behaviour, neuronal structure, and histone H3K4 methylation
Christina N. Vallianatos, Brynne Raines, Robert S. Porter…·Shigeki Iwase
This study shows that KMT2A and KDM5C, which have opposing enzymatic activities, work together to regulate neuronal structure, behavior, and H3K4 methylation, with their combined loss reversing some phenotypes.
55 citationstop 5% - GeneticsbioRxivPreprint
Induction of X-chromosome Inactivation by the Histone Demethylase SMCX/KDM5C
Srimonta Gayen, Emily T. Maclary, Yumie Murata-Nakamura…·Sundeep Kalantry
This study shows that SMCX/KDM5C, a histone demethylase, is required for X-inactivation in female mammals by inducing Xist RNA and silencing X-linked genes.
DOI 10.1101/175174