Subtyping evaluation of Salmonella Enteritidis using SNP and core genome MLST with nanopore reads
Z. Xian, S. Li, D. A. Mann, Y. Huang, F. Xu, X. Wu, S. Tang, G. Zhang, A. Stevenson, C. Ge, X. Deng
This study evaluates the use of nanopore sequencing for SNP and cgMLST subtyping of Salmonella Enteritidis, showing high concordance with Illumina data despite sequencing errors.
bioRxiv · May 3, 2022 · PreprintMicrobiology