Author

Ziyu Liu

Beihang University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 2 Bioengineering· 1 Ecology· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:differential expression· 3 Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Research Focus:database / resource· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Ariana ChrissiD· 1 shared Arinjita BhattacharyyaiD· 1 shared Ashvin RaviiD· 1 shared Briana Wyman· 1 shared Chao CheniD· 1 shared Chengbin HeiD· 1 shared Chi MaiD· 1 shared Chia-Yi Joy LeeiD· 1 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperGenetic & Genomic Medicine

Ariana ChrissORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Identification of High-Risk Cells in Single-Cell Spatially Resolved Transcriptomics Data Using DEGAS Spatial Smoothing

Debolina Chatterjee, Justin L. Couetil, Ziyu Liu, Kun Huang, Chao Chen, Jie Zhang, Michael A. Kalwat, Travis S. Johnson

The paper introduces DEGAS, a method to identify high-risk cells in spatial transcriptomics data by transferring disease attributes to individual cells, validated in cancer and diabetes datasets.

Bioinformatics · Apr 1, 2026Peer-reviewedBioinformatics

Looking backward for the future: long-term population recovery, habitat associations, and future climatic vulnerability of the critically endangered Sino-Mongolian beaver (Castor fiber birulai) in China

Wenwen Chu, Yuanbao Du, Roberto Salguero‐Gómez, Yingjie Qi, Chi Ma, Wenxu Lan, Xiaoyun Li, Rukeya Abulimit, Fangling Zheng, Ziyu Liu, Yuting Gao, Huanxin Liu, Chengbin He, K. LI, Hongjun Chu

This study tracks the population recovery and habitat preferences of the Sino-Mongolian beaver and assesses future climatic vulnerability using historical and projected data.

bioRxiv · Feb 23, 2026 · PreprintEcology

TREM2 agonist antibody rebuilds the resident synovial macrophage lining barrier in rheumatoid arthritis

Huihui Yuan, Jingyun Wang, Qichao Wang, Le Jiang, Leixin Liu, Weicheng Shen, Peixia Li, Wanting Liu, Ziyu Liu, Fanlei Hu, Xu Cai, Wanli Liu, Qiong Wu, Xiumei Wang, Hao Yan, Xiaodan Sun

This study shows that a TREM2 agonist antibody rebuilds the synovial macrophage lining barrier in RA by shifting macrophage states toward a barrier-like phenotype.

bioRxiv · Feb 5, 2026 · PreprintBioengineering

Regulatory landscape of Alzheimer's disease variants in human microglia

Chia-Yi Joy Lee, Ashvin Ravi, Tzu-Chieh Huang, Briana Wyman, Ziyu Liu, Ariana Chriss, Jack Humphrey, David A. Knowles, Chris J. Cotsapas, Laura M. Huckins, Towfique Raj, Kristen Brennand

The paper identifies regulatory variants associated with Alzheimer's disease in human microglia using MPRA and highlights differences in variant activity between cell sources.

medRxiv · Oct 13, 2025 · PreprintGenetic & Genomic Medicine

Repurposing without Reinventing the Wheel - Ensemble Models for Differential Analysis

Suvo Chatterjee, Erina Paul, Ziyu Liu, Jialin Gao, Piyali Basak, Arinjita Bhattacharyya, Chitrak Banerjee, Himel Mallick

The paper introduces an ensemble framework for differential analysis that combines multiple models to improve performance across various omics data types.

bioRxiv · Apr 7, 2025 · PreprintBioinformatics