Author

Daniel Cifuentes

Boston UniversityORCID 0000-0001-5442-4843Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Developmental Biology· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:zebrafish· 4 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1

Frequent Co-Authors

Dmitry A. KretoviD· 2 shared Owen Sanborn· 2 shared Alexandra Mora-MartiniD· 1 shared Anne L Robertson· 1 shared Antonio J. GiráldeziD· 1 shared Carter M. Takacs· 1 shared Charles E. VejnariD· 1 shared Damir Musaev· 1 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersMolecular Biology

Dmitry A. KretovORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Cancer BiologybioRxivPreprintNov 9, 2026

ERV-derived dsRNAs induce stress granules that drive neural crest fate to initiate melanoma

Kyle D Drake, Emily Formato, Siras Hakobyan…·Leonard I Zon

DOI 10.64898/2026.11.06.764901

𝕏 PostBluesky

Molecular BiologyMolecular CellPeer-reviewedFeb 1, 2026

RBPscan: A Quantitative, In Vivo Tool for Profiling RNA-Binding Protein Interactions

Dmitry A. Kretov, Owen Sanborn, Thora McIsaac…·Daniel Cifuentes

RBPscan profiles RBP-RNA interactions in vivo by integrating RNA editing with MPRA, quantifying binding strength and identifying motifs across species.

5 citationstop 2%

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Developmental BiologyNature CommunicationsPeer-reviewedMay 7, 2024

The miR-144/Hmgn2 regulatory axis orchestrates chromatin organization during erythropoiesis

Dmitry A. Kretov, Leighton Folkes, Alexandra Mora-Martin…·Daniel Cifuentes

This study identifies miR-144 and Hmgn2 as key regulators of chromatin condensation during erythropoiesis, showing their conserved role from fish to humans.

10 citations

𝕏 PostBluesky

GenomicsGenome ResearchPeer-reviewedJul 1, 2019

A post-transcriptional regulatory code for mRNA stability during the zebrafish maternal-to-zygotic transition

Charles E. Vejnar, Mario Abdelmessih, Carter M. Takacs…·Antonio J. Giráldez

The paper identifies cis-regulatory elements and trans-factors governing mRNA stability during zebrafish MZT and develops a model to predict mRNA stability.

79 citations

zebrafishbulk RNA-seq

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