Author

Joseph L Catallini II

Johns Hopkins UniversityORCID 0000-0001-5949-0399Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Andrew E. JaffeiD· 3 shared Keri MartinowichiD· 3 shared Madhavi TippaniiD· 3 shared Joel E. KleinmaniD· 2 shared Kristen R. MaynardiD· 2 shared Leonardo Collado‐TorresiD· 2 shared Lukas M. WeberiD· 2 shared Matthew Nguyen TraniD· 2 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersNeuroscience

Andrew E. JaffeORCID

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3 papers

Recent·Most cited

BioinformaticsBiological ImagingPeer-reviewedJan 1, 2023

VistoSeg: processing utilities for high-resolution Visium/Visium-IF images for spatial transcriptomics data

Madhavi Tippani, Heena R. Divecha, Joseph L Catallini II…·Kristen R. Maynard

VistoSeg processes high-resolution Visium/Visium-IF images to integrate image-derived metrics with spatial gene expression data for spatial transcriptomics analysis.

25 citations

spatial transcriptomicsexperimental assay

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NeuroscienceProceedings of the National Academy of SciencesPeer-reviewedJan 11, 2022

Electrophysiological measures from human iPSC-derived neurons are associated with schizophrenia clinical status and predict individual cognitive performance

Stephanie C. Page, Srinidhi Rao Sripathy, Federica Farinelli…·Brady J. Maher

The paper identifies electrophysiological measures in hiPSC-derived neurons linked to schizophrenia diagnosis and cognitive performance.

67 citationstop 1%

humanbulk RNA-seq

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NeuroscienceNature NeurosciencePeer-reviewedFeb 8, 2021

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

Kristen R. Maynard, Leonardo Collado‐Torres, Lukas M. Weber…·Andrew E. Jaffe

The paper maps spatial gene expression in the human dorsolateral prefrontal cortex using spatial transcriptomics and identifies layer-specific gene expression patterns linked to neuropsychiatric disorders.

1,222 citationstop 1%

humanspatial transcriptomics

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