Author

Patrick Boyd

University of Notre DameORCID 0000-0001-5957-5202Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:zebrafish· 4 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:ATAC-seq· 2 Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

David R. HydeiD· 4 shared Seth BlackshawiD· 3 shared Thanh V. HoangiD· 3 shared Isabella PalazzoiD· 2 shared Jiang X. QianiD· 2 shared Leah J. CampbelliD· 2 shared Aaron KryloviD· 1 shared Adrian M. ReichiD· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersNeuroscience

David R. HydeORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

NeuroscienceNature CommunicationsPeer-reviewedDec 20, 2023

Common and divergent gene regulatory networks control injury-induced and developmental neurogenesis in zebrafish retina.

Pin Lyu, María Iribarne, Dmitri Serjanov…·Seth Blackshaw

The paper compares gene regulatory networks in zebrafish retinal regeneration and development after different neuronal subtype losses, finding both similarities and differences.

61 citationstop 2%

zebrafishscRNA-seq

𝕏 PostBluesky

GeneticsbioRxivPreprintMar 20, 2023

Her6 and Prox1 are novel regulators of photoreceptor regeneration in the zebrafish retina

Kellie Veen, Aaron Krylov, Shuguang Yu…·Patricia Regina Jusuf

This study identifies Her6 and Prox1 as regulators of photoreceptor regeneration in zebrafish retina, showing they cross-regulate to promote differentiation.

1 citation

zebrafishexperimental assay

𝕏 PostBluesky

NeuroscienceJournal of NeurosciencePeer-reviewedJun 7, 2022

Notch inhibition promotes regeneration and immunosuppression supports cone survival in a zebrafish model of inherited retinal dystrophy

Joseph Fogerty, Ping Song, Patrick Boyd…·Brian D. Perkins

32 citations

zebrafishbulk RNA-seq

𝕏 PostBluesky

NeuroscienceSciencePeer-reviewedOct 1, 2020

Cross-species transcriptomic and epigenomic analysis reveals key regulators of injury response and neuronal regeneration in vertebrate retinas.

Thanh V. Hoang, Jie Wang, Patrick Boyd…·Seth Blackshaw

This study identifies gene regulatory networks controlling proliferative and neurogenic competence in retinal Muller glia.

422 citationstop 1%

zebrafishmouse

𝕏 PostBluesky