Author

Galina A. Erikson

Salk Institute for Biological StudiesORCID 0000-0001-6041-5652Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Neuroscience· 1

Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:ChIP-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Arko SeniD· 2 shared Graham McVickeriD· 2 shared Sélène T. TyndaleiD· 2 shared Yi FuiD· 2 shared Arya R MassaratiD· 1 shared Cari C. DowlingiD· 1 shared Chen FarhyiD· 1 shared Elena Blanco‐SuáreziD· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Arko SenORCID

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3 papers

Recent·Most cited

Activity-Dependent Modulation of Synapse-Regulating Genes in Astrocytes

Isabella Farhy-Tselnicker, Matthew Boisvert, Hanqing Liu, Cari C. Dowling, Galina A. Erikson, Elena Blanco‐Suárez, Chen Farhy, Maxim Nikolaievich Shokhirev, Joseph R. Ecker, Nicola J. Allen

The paper identifies astrocyte synapse-regulating genes in the developing mouse visual cortex and shows their expression is modulated by neuronal activity and calcium signaling.

eLife · Sep 8, 2021Peer-reviewedNeuroscience

Discovering single nucleotide variants and indels from bulk and single-cell ATAC-seq

Arya R Massarat, Arko Sen, Jeff Jaureguy, Sélène T. Tyndale, Yi Fu, Galina A. Erikson, Graham McVicker

This study evaluates variant callers on ATAC-seq data to discover SNVs and indels, finding VarCA outperforms individual callers in both bulk and single-cell data.

Nucleic Acids Research · Jul 8, 2021Peer-reviewedBioinformatics

BreakCA, a method to discover indels using ChIP-seq and ATAC-seq reads, finds recurrent indels in regulatory regions of neuroblastoma genomes

Arko Sen, Sélène T. Tyndale, Yi Fu, Galina A. Erikson, Graham McVicker

BreakCA identifies indels in regulatory regions using ChIP-seq and ATAC-seq, finding recurrent indels in neuroblastoma cell lines that may be oncogenic.

bioRxiv · Apr 11, 2019 · PreprintBioinformatics