Author

Elisa B. Caffrey

Stanford MedicineORCID 0000-0001-6223-5137Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cancer & tumor microenvironment· 1 Research Focus:database / resource· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:metabolism & bioenergetics· 1 Assay:metabolomics· 1 Assay:metagenomics· 1 Organism:mouse· 1

Frequent Co-Authors

Justin Laine SonnenburgiD· 2 shared Anita J ReddyiD· 1 shared Caroline Isabel KotheiD· 1 shared Elektra Kantzari RobinsoniD· 1 shared Emma R. GuibersoniD· 1 shared Erica Dutil SonnenburgiD· 1 shared Hannah Constance WastykiD· 1 shared Jessica L. FessleriD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMicrobiology

Justin Laine SonnenburgORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintAug 1, 2026

Fermentation-Derived Metabolites Shape Host Biology to Attenuate Severity of Inflammatory and Metabolic Disease

Elisa B. Caffrey, Elektra Kantzari Robinson, Jessica L. Fessler…·Justin Laine Sonnenburg

This study identifies fermentation-derived metabolites (FDMs) from fermented foods that modulate immune, microbial, and metabolic systems to reduce inflammation and metabolic disease severity.

1 citation

mousemetabolomics

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MicrobiologymSystemsPeer-reviewedAug 19, 2025

MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics

Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe…·Justin Laine Sonnenburg

MiFoDB is a metagenomics workflow that identifies microbes in fermented foods with high taxonomic resolution, enabling strain tracking and functional analysis.

12 citations

metagenomicsexperimental assay

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