Author

Choon Kiat Ong

Agency for Science, Technology and ResearchORCID 0000-0001-6402-4288Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:large language model· 1

Frequent Co-Authors

Jing Quan LimiD· 3 shared Olaf RötzschkeiD· 2 shared Soon Thye LimiD· 2 shared Agamjyot Singh ChadhaiD· 1 shared Benjamin M. F. Mow· 1 shared Bernett Teck Kwong LeeiD· 1 shared Bin Tean TehiD· 1 shared Burton Kuan Hui ChiaiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Jing Quan LimORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

A Domain-Specific Language Model Approach for Identifying Immunogenic Epitopes from Publicly Available Data: EpitopeMiner

Wei Kit Tan, Wei Tang, Agamjyot Singh Chadha, Roopa Niedu, Wendy Lee, Jing Quan Lim, Menaka Priyadharsani Rajapakse, Solomon Wilson, Kaibo Duan, Raymand Wei Liang Chong, Choon Kiat Ong, Bernett Teck Kwong Lee, Olaf Rötzschke, Mai Chan Lau

EpitopeMiner identifies immunogenic epitopes using a domain-specific LLM with RAG, improving retrieval of relevant literature and supporting neoantigen validation.

bioRxiv · Jan 21, 2025 · PreprintCancer Biology

Correspondence: Recurrent GNAQ mutation encoding T96S in natural killer/T cell lymphoma

Jing Quan Lim, Soon Thye Lim, Choon Kiat Ong

The paper identifies a recurrent GNAQ p.T96S mutation in NKTCL patients and suggests it may be a false-positive due to sequencing misalignment with the GNAQ pseudogene.

bioRxiv · Apr 1, 2020 · PreprintGenomics

Recurrent PD-L1 Structural Rearrangements in Natural Killer/T Cell Lymphoma Patients with Complete Response to PD-1 Blockade Therapy

Jing Quan Lim, Tiffany Pooi Ling Tang, Qingqing Cai, Daryl Chen Lung Tan, Maarja‐Liisa Nairismägi, Yurike Laurensia, Burton Kuan Hui Chia, Roujun Peng, Jabed Iqbal, Da Huang, Tammy Linlin Song, Wan Lu Pang, Daryl Ming Zhe Cheah, Cedric Chuan Young Ng, Vikneswari Rajasegaran, , Choon Kiat Ong

The paper identifies recurrent PD-L1 structural rearrangements and JAK3 mutations in NKTL patients achieving CR with PD-1 blockade therapy, suggesting genomic screening may improve patient selection.

bioRxiv · Aug 21, 2018 · PreprintGenomics