Author

Akina Osaki

Boston CollegeORCID 0000-0001-7084-5883Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:host-pathogen & immune response· 1 Approach:statistical model· 1

Frequent Co-Authors

Ian W. CampbelliD· 2 shared Matthew K. WaldoriD· 2 shared Julia A. HotingeriD· 1 shared Karthik HullahalliiD· 1 shared Masataka SuzukiiD· 1 shared Ting YaniD· 1 shared Yuko HasegawaiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 15 mutual co-author links

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2 shared papersImmunology

Ian W. CampbellORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

ImmunologyPLoS PathogensPeer-reviewedAug 5, 2026

✦ In-depth digest

Transcriptomic timeseries links hepatic gene expression to an early and self-limited systemic response to enteric infection

Yuko Hasegawa, Akina Osaki, Masataka Suzuki…·Matthew K. Waldor

Matched liver and colon RNA-seq timeseries during Citrobacter rodentium infection in mice reveal an intimin-dependent hepatic cytokine burst at 3 days that tracks serum cytokine kinetics.

DOI 10.1371/journal.ppat.1014152

mousebulk RNA-seq

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MicrobiologyeLifePeer-reviewedOct 10, 2024

Quantification of Salmonella enterica serovar Typhimurium Population Dynamics in Murine Infection Using a Highly Diverse Barcoded Library

Julia A. Hotinger, Ian W. Campbell, Karthik Hullahalli…·Matthew K. Waldor

This paper quantifies Salmonella enterica serovar Typhimurium population dynamics in mice using a barcoded library, revealing bottlenecks, compartmentalization, and dissemination patterns.

12 citations

mouseexperimental assay

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