Author

Joseph F. Cardiello

Lund UniversityORCID 0000-0001-7212-6508Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Mary Ann AlleniD· 2 shared Robin D. DowelliD· 2 shared Alberto JoveniD· 1 shared András SimoniD· 1 shared Clément HelsensiD· 1 shared Daniel RamireziD· 1 shared Georgia E.F. BaroneiD· 1 shared Jacob T. StanleyiD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Mary Ann AllenORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

GenomicsbioRxivPreprintDec 3, 2025

Base Composition Influences the Position andPrecision of RNA Polymerase II Disassociation inBasal and Perturbed Conditions.

Georgia E.F. Barone, Jacob T. Stanley, Daniel Ramirez…·Robin D. Dowell

The paper identifies two types of Pol II disassociation regions, differing in base composition and sensitivity to cellular perturbations.

DOI 10.64898/2025.12.02.691879

bulk RNA-seqstatistical model

𝕏 PostBluesky

BioinformaticsLife Science AlliancePeer-reviewedMay 17, 2023

Accurate genotype-based demultiplexing of single cell RNA sequencing samples from non-human animals

Joseph F. Cardiello, Alberto Joven, Sarantis Giatrellis…·Nicholas D. Leigh

This study validates SNP-based demultiplexing for pooled scRNA-seq data across multiple non-human species, showing accurate demultiplexing with only transcriptome data and no prior genetic reference.

21 citations

zebrafishArabidopsis

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 17, 2023

Characterizing Primary transcriptional responses to short term heat shock in paired fraternal lymphoblastoid lines with and without Down syndrome.

Joseph F. Cardiello, Jessica Westfall, Robin D. Dowell, Mary Ann Allen

The paper investigates the heat shock response in lymphoblastoid cell lines with and without trisomy 21, finding a more robust response in trisomy 21 cells.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky