Author

Clément Helsens

École Polytechnique Fédérale de LausanneORCID 0000-0002-9243-7554Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:zebrafish· 3 Research Focus:cell type annotation· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:imaging· 1 Organism:mouse· 1

Frequent Co-Authors

Andrew C. OatesiD· 2 shared Alberto JoveniD· 1 shared András SimoniD· 1 shared Chloé Jollivet· 1 shared Edward AndòiD· 1 shared Emanuel VasqueziD· 1 shared Florian AymannsiD· 1 shared Frédéric Pili· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersDevelopmental Biology

Andrew C. OatesORCID

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Author profile →

3 papers

Recent·Most cited

Real-Time Multi-Position and Multi-ROI Tracking with LiLiTTool for Smart Light-Sheet Microscopy in Growing Samples

Clément Helsens, Frédéric Pili, Emanuel Vasquez, Florian Aymanns, Jean-Yves Tinévez, Edward Andò, Andrew C. Oates

LiLiTTool enables real-time tracking of multiple regions of interest in growing embryos using deep learning and sensor fusion, improving long-term imaging reliability.

bioRxiv · Apr 7, 2026 · PreprintDevelopmental Biology

Clock driven waves of Tbx6 expression prefigure somite boundaries

Olivier F. Venzin, Chloé Jollivet, Nicolas Chiaruttini, Olga Rosspopoff, Clément Helsens, Luis G. Morelli, Koichiro Uriu, Andrew C. Oates

The paper uses live imaging in zebrafish to show that Tbx6 expression waves, driven by Hes/Her genes, prefigure somite boundaries by arresting in boundary cells that later express Mesp.

bioRxiv · Nov 9, 2023 · PreprintDevelopmental Biology

Accurate genotype-based demultiplexing of single cell RNA sequencing samples from non-human animals

Joseph F. Cardiello, Alberto Joven, Sarantis Giatrellis, Clément Helsens, András Simon, Nicholas D. Leigh

This study validates SNP-based demultiplexing for pooled scRNA-seq data across multiple non-human species, showing accurate demultiplexing with only transcriptome data and no prior genetic reference.

Life Science Alliance · May 17, 2023Peer-reviewedBioinformatics