Luis F. Rivera

The paper profiles the metabolome and genomes of five amaranth cultivars to assess nutritional quality and genetic differences.

This paper engineers Escherichia coli Nissle to deliver therapeutic peptides using CRISPR-Cas12 and an AI-based pipeline for peptide prediction.

The paper presents 11 new chromosome-level genome assemblies of Oryza species, revealing core genome conservation and subgenome plasticity, and highlights implications for crop improvement.

The paper analyzes the genetic composition and history of the bread wheat D genome using a pangenome of its donor species, revealing contributions from discrete subpopulations of Aegilops tauschii.

The paper presents an HPC-based workflow for genome variant calling using GATK, demonstrating SNP detection in four plant species and identifying novel SNPs in rice.

The paper constructs a pan-genome inversion index for Asian rice using 16 genomes and finds a high inversion rate with functional implications.