Author

Nadine Ebert

University of BernORCID 0000-0001-7603-1864Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:host-pathogen & immune response· 1 Assay:multiome· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Volker ThieliD· 3 shared G. Tuba BarutiD· 2 shared Inês Berenguer VeigaiD· 2 shared Alberto ValdeolivasiD· 1 shared Amadeo Munoz-GarciaiD· 1 shared Anke J. LakerveldiD· 1 shared Anne BonniniD· 1 shared Anne T. GelderloosiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersMolecular Biology

Volker ThielORCID

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3 papers

Recent·Most cited

Molecular BiologybioRxivPreprintApr 13, 2026

Loss of host factor-mediated m6Am methylation of the viral RNA cap impairs SARS CoV-2 replication

Radha Raman Pandey, Nadine Ebert, David Homolka…·Ramesh S. Pillai

This study identifies PCIF1 as a host factor that methylates the SARS-CoV-2 RNA cap, enhancing viral replication and reducing disease severity in mice.

DOI 10.64898/2026.04.10.717462

humanmouse

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MicrobiologyJournal of Innate ImmunityPeer-reviewedFeb 27, 2026

Respiratory syncytial virus nonstructural protein 1 inhibits production of cytokines and chemokines by differentiated primary nasal epithelial cells cultured at air-liquid interface

Rosanne W. Koutstaal, Amadeo Munoz-Garcia, Nadine Ebert…·Puck B. van Kasteren

This study shows RSV NS1 supports viral replication by inhibiting IFN production and chemokine secretion in nasal epithelial cells, using an ALI model for vaccine assessment.

DOI 10.1159/000550987

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintMar 21, 2025

Deep learning-based 3D spatial transcriptomics with X-Pression

Demeter Túrós, Lollija Gladiseva, Marius Alexandru Botos…·Étori Aguiar Moreira

X-Pression reconstructs 3D expression signatures from volumetric microcomputed tomography data, demonstrating its utility in analyzing vaccine efficacy and viral replication in mouse lungs.

7 citations

mousespatial transcriptomics

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