Author

G. Tuba Barut

University of BernORCID 0000-0002-3863-0775Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Immunology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Organism:chicken / avian· 1 Approach:deep learning· 1 Assay:flow cytometry· 1 Organism:human· 1

Frequent Co-Authors

Inês Berenguer VeigaiD· 2 shared Nadine EbertiD· 2 shared Volker ThieliD· 2 shared Alberto ValdeolivasiD· 1 shared Anne BonniniD· 1 shared Artur SummerfieldiD· 1 shared Astrid Chanfon· 1 shared Bettina Salome TrüebiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMolecular Biology

Inês Berenguer VeigaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Loss of host factor-mediated m6Am methylation of the viral RNA cap impairs SARS CoV-2 replication

Radha Raman Pandey, Nadine Ebert, David Homolka, G. Tuba Barut, Bettina Salome Trüeb, Hanspeter Stalder, Elena Delfino, Cathrine Broberg Vågbø, Inês Berenguer Veiga, Sebastian A. Leidel, Volker Thiel, Ramesh S. Pillai

This study identifies PCIF1 as a host factor that methylates the SARS-CoV-2 RNA cap, enhancing viral replication and reducing disease severity in mice.

bioRxiv · Apr 13, 2026 · PreprintMolecular Biology

Deep learning-based 3D spatial transcriptomics with X-Pression

Demeter Túrós, Lollija Gladiseva, Marius Alexandru Botos, Chang He, G. Tuba Barut, Inês Berenguer Veiga, Nadine Ebert, Anne Bonnin, Astrid Chanfon, Llorenç Grau‐Roma, Alberto Valdeolivas, Sven Rottenberg, Volker Thiel, Étori Aguiar Moreira

X-Pression reconstructs 3D expression signatures from volumetric microcomputed tomography data, demonstrating its utility in analyzing vaccine efficacy and viral replication in mouse lungs.

bioRxiv · Mar 21, 2025 · PreprintBioinformatics

Bovine dendritic-cell subsets in lymphoid and non-lymphoid tissues: work in progress

Stephanie C. Talker, G. Tuba Barut, Artur Summerfield

The paper investigates bovine dendritic-cell subsets in various tissues using flow cytometry and bulk RNA-seq, identifying potential cDC1, cDC2, and pDC subsets based on CD4 and CD13 expression.

bioRxiv · Sep 17, 2024 · PreprintImmunology