Author

Marina I. Savenkova

Washington State UniversityORCID 0000-0001-8325-0141Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Research Focus:cell type annotation· 1 Research Focus:genome assembly· 1 Organism:human· 1

Frequent Co-Authors

Ian M. BrabbiD· 2 shared Sascha H. C. DuttkeiD· 2 shared Andrew M. BoddickeriD· 1 shared Anna L. McDonaldiD· 1 shared Bayley R. McDonaldiD· 1 shared Colette Lafontaine PicardiD· 1 shared Cristina Wetzel da CunhaiD· 1 shared Daniela D. MoréiD· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

Ian M. BrabbORCID

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3 papers

Recent·Most cited

Enhancers associated with unstable RNAs are rare in plants

Bayley R. McDonald, Colette Lafontaine Picard, Ian M. Brabb, Marina I. Savenkova, Robert J. Schmitz, Steven E. Jacobsen, Sascha H. C. Duttke

The paper identifies that unstable transcripts are rare in plants and often originate from promoters, challenging the use of genome annotations to infer enhancers.

Nature Plants · Jul 30, 2024Peer-reviewedGenomics

Efficient small fragment sequencing of human, cow, and bison miRNA, small RNA or csRNA-seq libraries using AVITI

Anna L. McDonald, Andrew M. Boddicker, Marina I. Savenkova, Ian M. Brabb, Xiaodong Qi, Daniela D. Moré, Cristina Wetzel da Cunha, Junhua Zhao, Sascha H. C. Duttke

The paper demonstrates that AVITI and Illumina sequencing technologies equally capture sRNA and csRNA libraries from human, cattle, and bison, revealing inaccuracies in genome annotations and highlighting the need for small RNA sequencing in livestock.

bioRxiv · May 28, 2024 · PreprintGenomics

Daily rhythms in lactate metabolism in the medial prefrontal cortex of mouse: Effects of light and aging

Naomi K. Wallace, Felicity Pollard, Marina I. Savenkova, Ilia N. Karatsoreos

This study examines lactate metabolism in the medial prefrontal cortex of aged and circadian desynchronized mice, finding disruptions in circadian rhythms and gene expression related to neurometabolism.

bioRxiv · May 9, 2019Neuroscience