Author

Olga V. Ermakova

Heidelberg UniversityORCID 0000-0001-8365-4904Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2 Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:Drosophila· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Ingrid LohmanniD· 3 shared Nils TrostiD· 3 shared Eugen RempeliD· 2 shared Jan U. LohmanniD· 2 shared Michael BoutrosiD· 2 shared Srividya TamirisaiD· 2 shared Alessia GambadoroiD· 1 shared Alessio MezziiD· 1 shared

Activity by Year

2018-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersDevelopmental Biology

Ingrid LohmannORCID

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4 papers

Recent·Most cited

NeurosciencebioRxivPreprintDec 19, 2019

X-ray 3D imaging of gene expression in whole-mount murine brain by microCT, implication for functional analysis of tRNA endonuclease 54 gene mutated in pontocerebellar hypoplasia.

Olga V. Ermakova, Tiziana Orsini, Paolo Fruscoloni…·Glauco P. Tocchini‐Valentini

The paper introduces an X-ray-based method for 3D gene expression analysis in whole-mount murine brains, demonstrating Tsen54 gene expression patterns in key brain regions relevant to motor and memory functions.

DOI 10.1101/2019.12.19.882688

mouseimaging

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Developmental BiologyeLifePeer-reviewedMay 3, 2019

The Hox Transcription Factor Ubx stabilizes Lineage Commitment by Suppressing Cellular Plasticity

Katrin Domsch, Julie Carnesecchi, Vanessa Disela…·Ingrid Lohmann

This study shows that Ubx suppresses cellular plasticity by interacting with Pho to set lineage-specific repressive chromatin marks, stabilizing lineage commitment in Drosophila.

26 citations

Drosophilaexperimental assay

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BioinformaticsPLoS ONEPeer-reviewedSep 28, 2018

WEADE: a workflow for enrichment analysis and data exploration

Nils Trost, Eugen Rempel, Olga V. Ermakova…·Ingrid Lohmann

WEADE provides a web tool for integrated enrichment analysis and data exploration of genomic datasets, enabling comparison of experiments and visualization of functional interactions.

6 citations

bulk RNA-seqstatistical model

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Developmental BiologyCell ReportsPeer-reviewedSep 1, 2018

Decoding the regulatory logic of the Drosophila male stem cell system

Srividya Tamirisa, Fani Papagiannouli, Eugen Rempel…·Ingrid Lohmann

The paper identifies key regulatory mechanisms in Drosophila male stem cells and provides a public dataset and tool for analyzing stem cell gene networks.

15 citations

DrosophilaChIP-seq

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