Author

Patrick J. Walsh

University of PennsylvaniaORCID 0000-0001-8392-4150Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 1 Developmental Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 3 Approach:experimental assay· 3 Organism:human· 3 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Eric F. JoyceiD· 3 shared Parisha P. ShahiD· 3 shared Rajan JainiD· 3 shared Son C. NguyeniD· 3 shared Daniel S. ParkiD· 2 shared May WaiiD· 2 shared Richard J. AbdilliD· 2 shared Aditi ChandraiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersCell Biology

Eric F. JoyceORCID

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3 papers

Recent·Most cited

Cell BiologyBioStudies DatabasePeer-reviewedApr 9, 2026

Mechanistic and Epigenetic Partitioning of Lamina-Associated Chromatin Revealed by a Genome-Wide Imaging Screen

Patrick J. Walsh, Elizabeth B. Kraeutler, Ricardo Linares-Saldana…·Eric F. Joyce

The paper identifies hnRNPK as a key regulator of LAD positioning and reveals two distinct LAD classes based on epigenetic marks.

2 citations

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GeneticsNaturePeer-reviewedJul 12, 2023

High-throughput Oligopaint screen identifies druggable regulators of genome folding

Daniel S. Park, Son C. Nguyen, Randi L Isenhart…·Eric F. Joyce

The paper develops HiDRO, a high-throughput imaging pipeline, to screen the human druggable genome and identifies >300 factors regulating chromatin folding, including GSK3A as a regulator of TAD interactions.

51 citationstop 3%

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Developmental BiologyGenome biologyPeer-reviewedJan 23, 2023

An atlas of lamina-associated chromatin across twelve human cell types revealsan intermediate chromatin subtype

Parisha P. Shah, Kathleen C. Keough, Ketrin Gjoni…·Rajan Jain

The paper maps lamin-associated chromatin across twelve human cell types, identifying two subtypes with distinct features and developmental dynamics.

74 citationstop 2%

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