Author

Judith F. Ashouri

University of California, San FranciscoORCID 0000-0001-8405-7503Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

Noah Perlmutter· 2 shared Steven Yu· 2 shared Alexander B. Carvidi· 1 shared Alexandra L. DegraeveiD· 1 shared Andrew D. PattersoniD· 1 shared Andrew GrossiD· 1 shared Chloe M. Heath· 1 shared Darren S. DumlaoiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersPharmacology & Toxicology

Noah Perlmutter

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2 papers

Recent·Most cited

Pharmacology & ToxicologybioRxivPreprintJun 26, 2025

The gut microbiome shapes pharmacology and treatment outcomes for a key anti-inflammatory therapy

Vanya Sofia Villa Soto, Alexandra L. Degraeve, Chloe M. Heath…·Renuka R. Nayak

This study shows that the gut microbiome affects methotrexate pharmacology in mice and contributes to interindividual variation in drug metabolism and treatment outcomes.

4 citations

mousehuman

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BioinformaticsFrontiers in ImmunologyPeer-reviewedJun 8, 2021

Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis

Dmitry Rychkov, Jessica A Neely, Tomiko Oskotsky…·Marina Sirota

This paper identifies 13 biomarkers for rheumatoid arthritis using cross-tissue transcriptomic data and machine learning, validated across multiple datasets and showing clinical utility.

47 citationstop 3%

humanbulk RNA-seq

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