Anthony R. Borneman

The paper identifies retrotransposon-mediated duplication of SSU1 as a mechanism for increased SO2 tolerance in high-tolerant Brettanomyces bruxellensis isolates.

This study investigates viral diversity and transcriptional changes in grapevines infected with Shiraz disease, revealing upregulated systemic acquired resistance and downregulated immunity genes.

This study examines the genetic diversity and evolutionary adaptations of Hanseniaspora species in wine environments, identifying genomic and phenotypic variations linked to fermentation adaptation.

The paper uses high throughput sequencing to identify a Leifsonia bacterium in Eucalyptus camaldulensis trees affected by Mundulla Yellows, providing the first evidence of potential infection.

The paper analyzes fungal microbiomes across grape fermentation to understand spatial and temporal dynamics, identifying three community types and the role of grape niche over local conditions.

The paper analyzes genomic adaptations during the transition of Ophiocordyceps from pathogen to insect associate, identifying gene losses and intensified selection in the associate genome.

The paper analyzes the genomic landscape of wild Saccharomyces cerevisiae from Australia, revealing admixture, aneuploidy, and recombination patterns in spontaneous fermentations.

The paper presents a long-read based reference genome assembly for Shiraz grapevine and identifies genetic features linked to its unique aroma profile.

The paper debugs a synthetic yeast chromosome and uses laboratory evolution to identify genomic rearrangements that suppress growth defects caused by synthetic modifications.

The paper presents new genome assemblies for five Brettanomyces species, revealing structural variations, gene expansions, and horizontal gene transfer events related to their adaptation and domestication.

Purge Haplotigs reduces synteny issues in diploid genome assemblies by reassigning duplicate contigs, improving assembly quality with minimal impact on completeness.

The paper identifies genetic markers distinguishing Chardonnay clones and reveals inbreeding between its parent species, Gouais blanc and Pinot noir.