Author

Andriana Manousidaki

Michigan State UniversityORCID 0000-0001-9213-795XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

Yuying XieiD· 2 shared Anna V. LittleiD· 1 shared Emily Anne LanzeliD· 1 shared Felipe NöriD· 1 shared Haitao WeniD· 1 shared HE Yu-min· 1 shared Hülya F. TaneriD· 1 shared Jacques Eduardo NoriD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersCancer Biology

Yuying XieORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintDec 6, 2024

SOX2-induced IL-1alpha-mediated immune suppression drives epithelial dysplasia malignant transformation

Hülya F. Taner, Wang Gong, Zackary R. Fitzsimonds…·Yu L. Lei

This study identifies a SOX2-CCL2-IL1 pathway that drives immune suppression in precancerous epithelial dysplasia, promoting malignant transformation.

3 citations

mousebulk RNA-seq

𝕏 PostBluesky

GenomicsPLoS Computational BiologyPeer-reviewedMay 29, 2024

Clustering and visualization of single-cell RNA-seq data using path metrics

Andriana Manousidaki, Anna V. Little, Yuying Xie

This paper introduces a new method for clustering and visualizing single-cell RNA-seq data using path metrics, which outperforms existing methods in preserving both global geometry and cluster structure.

4 citations

scRNA-seqstatistical model

𝕏 PostBluesky