Author

Harald Barsnes

University of BergenORCID 0000-0001-9696-2148Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Research Focus:gene regulatory network inference· 2 Research Focus:software / tool· 2 Approach:experimental assay· 1 Assay:protein structure· 1

Frequent Co-Authors

Luis Francisco Hernández SáncheziD· 4 shared Bram BurgeriD· 3 shared Marc VaudeliD· 3 shared Jim ShofstahliD· 2 shared Pål R. NjølstadiD· 2 shared Stefan JohanssoniD· 2 shared Yasset Pérez‐RiveroliD· 2 shared Andrew CollinsiD· 1 shared

Activity by Year

2018-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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4 shared papersBioinformatics

Luis Francisco Hernández SánchezORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Extending protein interaction networks using proteoforms and small molecules

Luis Francisco Hernández Sánchez, Bram Burger, Rodrigo Alexander Castro Campos, Stefan Johansson, Pål R. Njølstad, Harald Barsnes, Marc Vaudel

This study extends protein interaction networks by incorporating small molecules, protein isoforms, and post-translational modifications to better represent biological systems.

Bioinformatics · Sep 26, 2023Peer-reviewedBioinformatics

ThermoRawFileParser: modular, scalable and cross-platform RAW file conversion

Niels Hulstaert, Jim Shofstahl, Timo T. Sachsenberg, Mathias Walzer, Harald Barsnes, Lennart Martens, Yasset Pérez‐Riverol

ThermoRawFileParser converts Thermo RAW files to open formats like mzML, enabling broader use with workflow systems and providing a user-friendly interface.

Journal of Proteome Research · Nov 22, 2019Peer-reviewedBioinformatics

PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping

Luis Francisco Hernández Sánchez, Bram Burger, Carlos Horro, Antonio Fabregat, Stefan Johansson, Pål R. Njølstad, Harald Barsnes, Henning Hermjakob, Marc Vaudel

PathwayMatcher maps omics data to pathway networks considering protein isoforms and modifications, enabling more precise pathway analysis.

GigaScience · Jul 30, 2019Peer-reviewedBioinformatics

Proteomics Standards Initiative Extended FASTA Format (PEFF)

Pierre‐Alain Binz, Jim Shofstahl, Juan Antonio Vizcaíno, Harald Barsnes, Robert J. Chalkley, Gerben Menschaert, Emanuele Alpi, Karl R. Clauser, Jimmy K. Eng, Lydie Lane, Sean L. Seymour, Luis Francisco Hernández Sánchez, Gerhard Mayer, Martin Eisenacher, Yasset Pérez‐Riverol, , Eric W. Deutsch

The paper introduces PEFF, a new format for proteomics data that enhances FASTA with metadata for sequence variants and PTMs, enabling better analysis in proteogenomics and top-down proteomics.

Journal of Proteome Research · May 13, 2019Peer-reviewedBioinformatics

Analysing the structure of pathways and its influence on the interpretation of biomedical datasets

Bram Burger, Luis Francisco Hernández Sánchez, Ragnhild Reehorst Lereim, Harald Barsnes, Marc Vaudel

This study examines the structure of pathway knowledgebases like Reactome and its impact on interpreting biomedical datasets, aiming to improve user understanding and result reliability.

Journal of Proteome Research · Sep 25, 2018Peer-reviewedBioinformatics