Daniel Gómez‐Pérez

REMAG: recovery of eukaryotic genomes from metagenomic data using non-contrastive self-supervised learning

REMAG improves eukaryotic genome recovery from metagenomic data by using non-contrastive self-supervised learning, outperforming existing tools in producing near-complete genomes.

Widespread detection of Polyethylene glycol reveals chronic human exposure through pharmaceutical drugs

Polyethylene glycol in human biofluids can mark drug exposure rather than contamination; it is oxidized to acid metabolites and appears in 2.3% of public metabolomics files.

Intrinsic disorder in elicitin-like effectors: Molecular shields in the arms race of biotrophic pathogens

The paper identifies intrinsic disorder in elicitin-like effectors of oomycete pathogens as a mechanism to shield against host immune recognition.

Cooperative siderophore use stabilizes a protective leaf microbiome

The paper shows that cooperative siderophore exchange between Rhodotorula kratochvilovae and Pseudomonas species stabilizes the leaf microbiome and protects plants from pathogens.

Integrating natural language processing and genome analysis enables accurate bacterial phenotype prediction

This study combines NLP and genome analysis to predict bacterial phenotypes by integrating literature and genomic data, revealing gene-phenotype correlations and hub species in microbial communities.