Author

Witold Kot

University of CopenhagenORCID 0000-0002-0188-4587Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Dennis Sandris NielseniD· 2 shared Tue Kjærgaard NielseniD· 2 shared Alex GobbiiD· 1 shared Alexander Byth CarstensiD· 1 shared Amalie Elisabeth Schønemann· 1 shared Anna Berggreen Skovmand· 1 shared Anna O. KildemoesiD· 1 shared Anna Struebel· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersImmunology

Dennis Sandris NielsenORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Danish profile of soft rot Pectobacteriaceae; A three-year field sampling study proving several clonal clades of soft rot isolates across diverse locations implicating a common origin

Julie Stenberg Pedersen, Laura Milena Forero Junco, Anna Struebel, Magnus Mulbjerg Rothgardt, Frank Hille, Charles M. A. P. Franz, Birgit Jensen, Tue Kjærgaard Nielsen, Witold Kot, Chayan Roy, Alexander Byth Carstens, Lars Hestbjerg Hansen

The paper uses whole genome sequencing of soft rot Pectobacteriaceae isolates from Danish potato farms to trace disease spread and identify potential phage-based biocontrol strategies.

bioRxiv · May 18, 2026 · PreprintMicrobiology

Exploring Clinical Class 1 Integrons as Valuable Targets for the Re-sensitization of Multidrug Resistant Pathogenic Bacteria Using CRISPR-Cas

Anna Berggreen Skovmand, Nicolai Juel Paaske, Arancha Peñil-Celis, Amalie Elisabeth Schønemann, Lærke Lund Hansen, Witold Kot, Maria Pilar Garcillán-Barcia, Tue Kjærgaard Nielsen

This study explores using CRISPR-Cas to target class 1 integrons in multidrug-resistant bacteria to re-sensitize them to antibiotics by removing resistance genes.

bioRxiv · Mar 28, 2025 · PreprintMicrobiology

Schistosoma mansoni-induced host immunopathology is gut microbiota dependent

Anna O. Kildemoes, Gabriele Schramm, Bente Pakkenberg, Fynn N. Krause, Morten Arendt Rasmussen, Camilla Friis Hansen, Witold Kot, Anne Jensen, Jakub Wawrcyniak, Julian Leether Griffin, Shona Wilson, Søren Skov, Axel Kornerup Hansen, Dennis Sandris Nielsen, Birgitte Jyding Vennervald

This study shows that gut microbiota influences liver pathology caused by Schistosoma mansoni infection in mice, but not ileum inflammation.

bioRxiv · Jan 24, 2025 · PreprintImmunology

A single strand-based library preparation method for unbiased virome characterization

Xichuan Zhai, Alex Gobbi, Witold Kot, Łukasz Krych, Dennis Sandris Nielsen, Ling Deng

This paper introduces a single-stranded library preparation method for virome characterization, showing improved accuracy and reduced bias compared to existing methods.

Microbiome · Oct 24, 2024Peer-reviewedMicrobiology