Author

Ling Deng

University of CopenhagenORCID 0000-0002-2190-9788Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Assay:metagenomics· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Organism:E. coli· 1 Organism:human· 1

Frequent Co-Authors

Dennis Sandris NielseniD· 2 shared Xichuan ZhaiiD· 2 shared Alex GobbiiD· 1 shared Damian Rafal PlichtaiD· 1 shared Hans Flinker BisgaardiD· 1 shared Jakob Nybo NisseniD· 1 shared Jakob StokholmiD· 1 shared Joachim JohanseniD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersMicrobiology

Dennis Sandris NielsenORCID

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3 papers

Recent·Most cited

Basal ppGpp signalling by SpoT integrates metabolism with acid resistance

Yueyue Liu, Muriel Leandra Schicketanz, Xichuan Zhai, Ling Deng, Kenn Gerdes, Yong Everett Zhang

The paper shows that basal ppGpp levels in E. coli are actively regulated by SpoT and are essential for metabolic homeostasis and acid resistance.

bioRxiv · Feb 21, 2026 · PreprintMicrobiology

A single strand-based library preparation method for unbiased virome characterization

Xichuan Zhai, Alex Gobbi, Witold Kot, Łukasz Krych, Dennis Sandris Nielsen, Ling Deng

This paper introduces a single-stranded library preparation method for virome characterization, showing improved accuracy and reduced bias compared to existing methods.

Microbiome · Oct 24, 2024Peer-reviewedMicrobiology

Genome binning of viral entities from bulk metagenomics data

Joachim Johansen, Damian Rafal Plichta, Jakob Nybo Nissen, Marie Louise Jespersen, Shiraz Ali Shah, Ling Deng, Jakob Stokholm, Hans Flinker Bisgaard, Dennis Sandris Nielsen, Søren Johannes Sørensen, Simon Rasmussen

The paper develops PHAMB, a method to bin viral genomes from bulk metagenomics data, and applies it to the HMP2 cohort to recover viral genomes and explore viral-host interactions.

Nature Communications · Feb 18, 2022Peer-reviewedGenomics