Author

Jeffrey Chen

University of Massachusetts AmherstORCID 0000-0002-0448-1820Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:electronic health records· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

Abhijeeth Erra· 1 shared Ali Ebrahimi Darsinouei· 1 shared Amanda M. LaueriD· 1 shared Cayla M. MilleriD· 1 shared Cody CarrolliD· 1 shared Elena Chrysostomou· 1 shared Federico CerianiiD· 1 shared Mingxu YouiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperNeuroscience

Abhijeeth Erra

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Logic-Gated Fluorogenic RNA Reporters for Multiplexed Live-Cell Imaging

Sima Khajouei, Ali Ebrahimi Darsinouei, Ru Zheng, Jeffrey Chen, Qinge Liu, Zhaolin Xue, Mingxu You

The paper introduces logicFRIES, a fluorogenic RNA platform enabling eight-plex live-cell imaging through logic-gated activation and sequential fluorescence imaging.

bioRxiv · Aug 21, 2026 · PreprintMolecular Biology

An Open-Source Deep Learning-Based Toolbox forAutomated Auditory Brainstem Response Analyses (ABRA)

Abhijeeth Erra, Cayla M. Miller, Jeffrey Chen, Elena Chrysostomou, Shannon Barret, Yasmin M. Kassim, Rick Adam Friedman, Amanda M. Lauer, Federico Ceriani, Walter Marcotti, Cody Carroll, Uri Manor

ABRA automates ABR waveform analysis using deep learning, achieving performance comparable to human experts while improving reproducibility and reducing analysis time.

Scientific Reports · Feb 19, 2026Peer-reviewedNeuroscience