Author

Shannon Barret

Howard Hughes Medical InstituteORCID 0009-0001-9775-7952Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Cell Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Assay:electronic health records· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:protein design· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Abhijeeth Erra· 1 shared Amanda M. LaueriD· 1 shared Caroline ReesiD· 1 shared Cayla M. MilleriD· 1 shared Chase J. MorganiD· 1 shared Cody CarrolliD· 1 shared Dwaipayan BasuiD· 1 shared Elena Chrysostomou· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperNeuroscience

Abhijeeth Erra

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

A bifunctional RNase H protein supports DNA replication and transcription in nucleus-forming Chimalliviridae phages

Phoolwanti Rani, Niklas Klusch, Shannon Barret, Taylor Forman, Makaela Levine, Margot Riggi, Caroline Rees, Rui Liu, Lloyd A. Hoffman, Meliné Norquist, Dwaipayan Basu, Koe Inlow, Emily G. Armbruster, Chase J. Morgan, Joe Pogliano, , Elizabeth Villa

This study identifies Rhc as a multifunctional protein essential for DNA replication and transcription in nucleus-forming phages, revealing its role in resolving R-loops and coordinating gene expression.

bioRxiv · Oct 2, 2026 · PreprintCell Biology

An Open-Source Deep Learning-Based Toolbox forAutomated Auditory Brainstem Response Analyses (ABRA)

Abhijeeth Erra, Cayla M. Miller, Jeffrey Chen, Elena Chrysostomou, Shannon Barret, Yasmin M. Kassim, Rick Adam Friedman, Amanda M. Lauer, Federico Ceriani, Walter Marcotti, Cody Carroll, Uri Manor

ABRA automates ABR waveform analysis using deep learning, achieving performance comparable to human experts while improving reproducibility and reducing analysis time.

Scientific Reports · Feb 19, 2026Peer-reviewedNeuroscience