Author

Maria Farooq

Translational Genomics Research InstituteORCID 0000-0002-0674-6992Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Approach:statistical model· 2 Approach:machine learning (classical)· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Muhammed MurtazaiD· 3 shared Tania Contente‐CuomoiD· 3 shared Alan Haruo BryceiD· 2 shared Aleksandar SekulićiD· 2 shared Barbara A. PockajiD· 2 shared Bradon R. McDonaldiD· 2 shared Brenda J. ErnstiD· 2 shared Havell MarkusiD· 2 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Muhammed MurtazaORCID

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3 papers

Recent·Most cited

Analysis of fragment ends in plasma DNA from patients with cancer

Karan Kumar Budhraja, Bradon R. McDonald, Michelle D. Stephens, Tania Contente‐Cuomo, Havell Markus, Maria Farooq, Patricia Filippsen Favaro, Sydney C Connor, Sara Ann Byron, Jan B. Egan, Brenda J. Ernst, Timothy K. McDaniel, Aleksandar Sekulić, Nhan L. Tran, Michael D. Prados, , Muhammed Murtaza

Analyzing the positioning and nucleotide sequence at fragment ends in plasma DNA may enable cancer diagnostics.

Science Translational Medicine · Jan 11, 2023Peer-reviewedGenetic & Genomic Medicine

Detection of residual disease after neoadjuvant therapy in breast cancer using personalized circulating tumor DNA analysis

Bradon R. McDonald, Tania Contente‐Cuomo, Stephen‐John Sammut, Ahuva Odenheimer-Bergman, Brenda J. Ernst, Nieves Perdigones, Suet‐Feung Chin, Maria Farooq, Rosa Mejia, Patricia A. Cronin, Karen S. Anderson, Heidi Kosiorek, DW Northfelt, Ann E. McCullough, Bhavika Patel, , Muhammed Murtaza

A personalized ctDNA test achieves high accuracy for residual disease detection after neoadjuvant therapy in breast cancer.

Science Translational Medicine · Aug 7, 2019Peer-reviewedGenomics

Evaluation of pre-analytical factors affecting plasma DNA analysis

Havell Markus, Tania Contente‐Cuomo, Maria Farooq, Winnie S. Liang, Mitesh J. Borad, Shivan Sivakumar, Simon Gollins, Nhan L. Tran, Harshil Dhruv, Michael E. Berens, Alan Haruo Bryce, Aleksandar Sekulić, Antoni Ribas, Jeffrey M. Trent, Patricia Mucci LoRusso, Muhammed Murtaza

The paper evaluates pre-analytical factors affecting plasma DNA analysis by comparing DNA extraction methods and blood collection tubes using a multiplexed ddPCR assay.

Scientific Reports · May 3, 2018Peer-reviewedGenomics