Rebecca Crudale

COATswga: A Coverage Optimizing and Accurate Toolkit for fast primer design in selective whole genome amplification

COATswga designs sWGA primers for efficient microbial genome recovery, showing improved amplification efficiency and coverage in low-parasitemia samples.

Scalable long-read Nanopore HPV16 Amplicon-based Whole-Genome Sequencing

This paper develops a scalable long-read sequencing method for HPV16 genome analysis, showing high accuracy and capturing full genetic diversity across multiple lineages.

Highly multiplex molecular inversion probe panel in Plasmodium falciparum targeting common SNPs approximates whole genome sequencing assessments for selection and relatedness

The paper develops a targeted sequencing panel for Plasmodium falciparum that approximates whole genome sequencing for population genetics analyses.

Interchromosomal segmental duplication drives translocation and loss of P. falciparum histidine-rich protein 3

The paper analyzes whole-genome-sequenced Plasmodium falciparum samples to understand gene deletions associated with malaria rapid diagnostic tests, identifying patterns of chromosomal rearrangements and duplication.