Author

Joseph D. Berry

The University of MelbourneORCID 0000-0002-0961-7782Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Assay:electronic health records· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Aaron James ElbourneiD· 1 shared Amy A. GelmiiD· 1 shared Andrew P. LeisiD· 1 shared Chayla L. ReevesiD· 1 shared Edward YangiD· 1 shared Hariprasad VenugopaliD· 1 shared Julie IskanderiD· 1 shared Kaiwen ZhangiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBiophysics

Aaron James ElbourneORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintJan 23, 2026

PartiNet is a dynamic adaptive neural network for high-performance particle picking in cryo-electron microscopy

Mihin Perera, Winnie Tan, Edward Yang…·Shabih Shakeel

PartiNet improves particle picking in cryo-EM with a dynamic neural network that adapts to micrograph quality, enhancing efficiency and particle yield without sacrificing accuracy.

2 citations

electronic health recordsdeep learning

𝕏 PostBluesky

BiophysicsAdvanced Materials InterfacesPeer-reviewedSep 4, 2025

Real-time Biomechanical Characterisation of Cytoskeletal Remodelling

Kaiwen Zhang, Chayla L. Reeves, Joseph D. Berry…·Amy A. Gelmi

This study uses Q-AFM to track real-time biomechanical changes in hMSCs during cytoskeletal remodelling induced by disruptors.

2 citations

humanATAC-seq

𝕏 PostBluesky