Julia Kodysh

The paper maps T cell epitopes in SARS-CoV-2, showing that immunodominant regions are conserved across variants and important for immune surveillance.

Vaxrank selects neoantigen vaccine peptides from tumor mutations, RNA data, and HLA type to design personalized cancer vaccines.

The paper describes a computational pipeline for a personalized neoantigen vaccine trial, including tools for variant calling, peptide selection, and sequence reconstruction.