Yavor Hadzhiev

The paper maps non-coding regulatory elements in common carp embryos, revealing subgenome-specific regulatory divergence during development.

This study shows that partially assembled TFIID complexes can initiate RNA polymerase II transcription but cannot fully replace holo-TFIID over time.

The paper identifies a high-density miR-430 promoter cluster that forms a transcription body, enabling early gene activation during the minor wave of zygotic genome activation in zebrafish.

The paper creates a central repository for zebrafish developmental genomics data, identifies new cis-regulatory elements, and compares regulatory elements between zebrafish and mouse.

This paper introduces a tool for segmenting and tracking lineage in noisy, low frame rate 4D fluorescence microscopy data from zebrafish embryos.

The paper identifies a conserved noncoding element in HOTAIR that functions both in cis and trans, regulating HOXC11 and HOXD11 expression.

The paper identifies dual-initiation promoters in zebrafish that use both canonical and non-canonical initiation motifs, showing differential regulation during development and conservation across species.

The paper identifies a nuclear transcription compartment that enables early gene expression before genome activation in metazoan embryos.