Author

Atish A. Wagh

University of Massachusetts Chan Medical SchoolORCID 0000-0002-1275-1341Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Jonathan K. WattsiD· 2 shared Adam K. HedgeriD· 1 shared Anastasia KhvorovaiD· 1 shared Athma A. PaiiD· 1 shared Dimas EcheverriaiD· 1 shared Eraj Shafiq KhokhariD· 1 shared Eric LuuiD· 1 shared Ezequiel Calvo-RoitbergiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMolecular Biology

Jonathan K. WattsORCID

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2 papers

Recent·Most cited

Organyl 5'-Phosphates in siRNA Guide Strands: Structure-Function Relationships Governing Anchoring in Argonaute 2 and Metabolic Stability

Theodore Carrigan-Broda, Luca F. R. Gebert, Samuel R. Hildebrand, Nozomi Yamada, Eric Luu, Jillian Caiazzi, Nicholas McHugh, Dimas Echeverria, Atish A. Wagh, Jonathan K. Watts, Anastasia Khvorova, Ian J. MacRae, Ken Yamada

This study identifies organyl 5'-phosphate mimics that enhance AGO2 binding and metabolic stability by interacting with a hydrophobic pocket in the MID domain.

bioRxiv · Feb 14, 2026 · PreprintMolecular Biology

CRYPTID-exon: streamlined detection of cryptic exons from RNA-seq data

Eraj Shafiq Khokhar, Kaitlyn Brokaw, Zachary J. Kartje, Marina Krykbaeva, Ezequiel Calvo-Roitberg, Adam K. Hedger, Jonathan Lee, Atish A. Wagh, Jonathan K. Watts, Athma A. Pai

CRYPTID-exon identifies cryptic exons in human RNA-seq data, showing their impact on mRNA stability and gene expression through ASO targeting.

bioRxiv · Dec 19, 2025 · PreprintGenomics