Author

Theodore Gouliouris

University of CambridgeORCID 0000-0002-2011-1205Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Organism:E. coli· 2 Organism:human· 2 Research Focus:variant calling· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Beth BlaneiD· 2 shared Francesc ColliD· 2 shared Kathy E. Raven· 2 shared Sharon J. PeacockiD· 2 shared Alexander Manuele· 1 shared Amjad KhaniD· 1 shared Amogelang R. RaphenyaiD· 1 shared Andrew G. McArthuriD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Beth BlaneORCID

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3 papers

Recent·Most cited

Accounting for allelic diversity and multicopy gene detection improves the accuracy of antibiotic resistance genotypic determination

Neris García‐González, Roser Ferragud Ferragud, Beth Blane, Jee In Kim, M. Estée Török, Ewan M. Harrison, Theodore Gouliouris, Francesc Coll

The paper improves antibiotic resistance genotyping accuracy by addressing allelic diversity and multicopy gene detection in bacterial genomes.

bioRxiv · Jun 18, 2026 · PreprintBioinformatics

Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents

Haley Sanderson, Kristen L. Gray, Alexander Manuele, Finlay Maguire, Amjad Khan, Chaoyue Liu, Chandana Navanekere Rudrappa, John J. Nash, James A. Robertson, Kyrylo Bessonov, Martins Oloni, Brian P. Alcock, Amogelang R. Raphenya, Tim Angus McAllister, Sharon J. Peacock, , Robert Gerald Beiko

This study profiles resistance determinants, virulence factors, and mobile genetic elements in 1273 Enterococcus faecium genomes from UK and Canada, showing habitat-associated gene and MGE patterns and a workflow for AMR surveillance.

Microbial Genomics · Sep 21, 2022Peer-reviewedGenomics

One Health genomic surveillance of Escherichia coli demonstrates distinct lineages and mobile genetic elements in isolates from humans versus livestock

Catherine Ludden, Kathy E. Raven, Dorota M. Jamrozy, Theodore Gouliouris, Beth Blane, Francesc Coll, Marcus Christofoor de Goffau, Plamena Naydenova, Carolyne Horner, Juan Hernandez-Garcia, Paul M. Wood, Nazreen F. Hadjirin, Milorad Radakovic, Nicholas M. Brown, Mark Holmes, , Sharon J. Peacock

The paper compares E. coli isolates from humans and livestock to assess transmission and resistance gene sharing, finding genetic distinctions and limited shared antimicrobial resistance genes.

mBio · Jan 21, 2019Peer-reviewedGenomics