Author

João Perdigão

University of LisbonORCID 0000-0002-2845-6718Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Organism:human· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Susana G. CampinoiD· 3 shared Taane Gregory ClarkiD· 3 shared Aasmund FostervoldiD· 2 shared Adam W. J. JenneyiD· 2 shared Adrian EgliiD· 2 shared Alessandra CornacchiaiD· 2 shared Alexandra ChiaveriniiD· 2 shared Aline CuénodiD· 2 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Susana G. CampinoORCID

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Author profile →

3 papers

Recent·Most cited

Ciprofloxacin resistance in Klebsiella pneumoniae: phenotype prediction from genotype and global distribution of resistance determinants

Kara K. Tsang, Iana Amke, David M. Aanensen, Jabir A. Abdulahi, Alexander Michael Aiken, Michael A. Bachman, Stephen G. Baker, Katherine Barry, Gherard Batisti Biffignandi, Emília Maria Medeiros de Andrade Belitardo, Iván Bloise, Ilhem Boutiba-Ben Boubaker, Chanté Fortuin, Sylvain Brisse, Susana G. Campino, , Carla Rodrigues

The paper develops a rules-based classifier to predict ciprofloxacin resistance in Klebsiella pneumoniae from genotype data and demonstrates its global distribution association with quinolone consumption.

Genome Medicine · Oct 27, 2026Peer-reviewedGenomics

A novel tool for designing targeted gene amplicons and an optimised set of primers for high-throughput sequencing in tuberculosis genomic studies

Linfeng Wang, Naphatcha Thawong, Joseph Thorpe, Matthew K. Higgins, Mark Tan Kia Ik, Waritta Sawaengdee, Surakameth Mahasirimongkol, João Perdigão, Susana G. Campino, Taane Gregory Clark, Jody Emile Phelan

TOAST optimises amplicon design for tuberculosis genomic studies, enabling high-throughput sequencing of drug resistance mutations across multiple platforms.

bioRxiv · Jan 13, 2025 · PreprintBioinformatics

Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae

Kara K. Tsang, Margaret M. C. Lam, Ryan R. Wick, Kelly L. Wyres, Michael A. Bachman, Stephen G. Baker, Katherine Barry, Sylvain Brisse, Susana G. Campino, Alexandra Chiaverini, Daniela María Cirillo, Taane Gregory Clark, Jukka Corander, Marta Corbella, Alessandra Cornacchia, , KlebNET AMR Genotype-Phenotype Group

This paper reclassifies SHV β-lactamase alleles in K. pneumoniae genomes based on mutations, improving genotype-phenotype understanding and updating the Kleborate tool.

Microbial Genomics · Oct 21, 2024Peer-reviewedGenomics