Dejan Štepec

The paper benchmarks nDIA and related proteomics methods, showing nDIA with DIA-NN and Tesorai Search provides high coverage and reliable results in proteomic analysis.

The paper evaluates a seven-protein plasma panel across brain proteomics cohorts to show its association with AD proteomic changes.

The paper shows that adding proteomics data to a single-cell RNA-seq model improves its performance beyond increasing model size.

This study investigates how RNA editing in cephalopods alters protein function through proteomics and biochemical assays, revealing its impact on protein stability, localization, and interactions.

This paper introduces a deep learning-based approach for peptide identification in mass spectrometry proteomics that outperforms existing tools by using spectra and peptide sequences directly.