Computational design of metalloproteases
An‐Qi Chen, Kejia Wu, Hojae Choi…·David A. Baker
This paper designs de novo metalloproteases using RoseTTAFold Diffusion 2, achieving high activity and specificity for cleaving various substrates.
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University of WashingtonORCID 0000-0002-3292-5070Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
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An‐Qi Chen, Kejia Wu, Hojae Choi…·David A. Baker
This paper designs de novo metalloproteases using RoseTTAFold Diffusion 2, achieving high activity and specificity for cleaving various substrates.
Donghyo Kim, Seth M. Woodbury, Woody Ahern…·David A. Baker
This paper designs highly active metallohydrolases using a new generative AI method, achieving kcat/KM values up to 53,000 M-1 s-1 without experimental optimization.
Amijai Saragovi, Harley Pyles, Timothy F. Huddy…·David A. Baker
The paper designs proteins that template mineralization of metal-oxides, showing they can guide hematite and ZnO growth under specific conditions.
Joseph L. Watson, David Juergens, Nathaniel R. Bennett…·David A. Baker
Fine-tuning RoseTTAFold as a diffusion denoiser gives RFdiffusion, a general protein backbone generator; a designed influenza haemagglutinin binder matched its model by cryo-EM.