Author

Farhan Yusuf

ORCID 0000-0002-4161-8718Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Research Focus:drug response / drug discovery· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:mouse· 1

Frequent Co-Authors

Albi CelajiD· 2 shared Bhargav KanuparthiiD· 2 shared Brandon VaziD· 2 shared Brendan J. Frey· 2 shared Christopher B. ColeiD· 2 shared Diane LyiD· 2 shared Ken J. KroniD· 2 shared Omar WagihiD· 2 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Albi CelajORCID

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Author profile →

2 papers

Recent·Most cited

Sequence based prediction of cell type specific microRNA binding and mRNA degradation for therapeutic discovery

Bhargav Kanuparthi, Sara E. Pour, Scott D. Findlay, Omar Wagih, Jahir M. Gutierrez, Rory Gao, Jeff A. Wintersinger, Jiun-Nong Lin, Martino Gabra, Emma Bohn, Tammy Lau, Chris Cole, Andrew Jung, Albi Celaj, Fraser Soares, , Brendan J. Frey

This paper introduces REPRESS, a deep learning model that predicts cell-type-specific microRNA binding and mRNA degradation from RNA sequences, outperforming existing methods in multiple tasks.

bioRxiv · May 15, 2025 · PreprintGenomics

An RNA foundation model enables discovery of disease mechanisms and candidate therapeutics

Albi Celaj, Alice Jiexin Gao, Tammy Lau, Erle M. Holgersen, Alston Lo, Varun Lodaya, Christopher B. Cole, Robert Edward Denroche, Carl Spickett, Omar Wagih, Pedro O. Pinheiro, Parth Vora, Pedrum Mohammadi‐Shemirani, Steve Chan, Zach Nussbaum, , Brendan J. Frey

The paper introduces BigRNA, an RNA foundation model that predicts RNA biology from DNA sequence and identifies therapeutic effects of SBOs on gene expression and splicing.

bioRxiv · Sep 20, 2023 · PreprintBioinformatics