Elizabeth A. Jaworski

Co-variation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa

The paper uses CoVaMa to analyze co-variation between SNVs and recombination events in viral genomes, finding correlations in FHV and HIV datasets.

Tau modulates mRNA transcription, alternative polyadenylation profiles of hnRNPs, chromatin remodeling and spliceosome complexes

This study investigates how WT and P301L tau proteins modulate transcription and alternative polyadenylation profiles in neuronal cells, revealing distinct gene expression changes related to chromatin remodeling and splicing.

RBFOX2 Is Critical For Maintaining Alternative Polyadenylation And Mitochondrial Health In Rat Myoblasts

This study identifies RBFOX2's role in maintaining alternative polyadenylation and mitochondrial health in rat myoblasts, linking it to heart disease pathology.

Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants

Tiled-ClickSeq enables complete SARS-CoV-2 genome sequencing with detection of RNA recombination and minority variants in a single assay.

Differential alphavirus defective RNA diversity between intracellular and encapsidated compartments is driven by subgenomic recombination events

This study identifies differential defective RNA (D-RNA) diversity between intracellular and encapsidated alphavirus compartments, showing that some D-RNAs arise de novo and are not packaged, with subgenomic D-RNAs identified as a novel subtype.

Poly(A)-ClickSeq: click-chemistry for next-generation 3´-end sequencing without RNA enrichment or fragmentation

Poly(A)-ClickSeq enables high-quality RNA-seq libraries of poly(A) site junctions without RNA enrichment or fragmentation, revealing new poly(A) sites and APA regulation.