Author

James P. J. Hall

University of LiverpoolORCID 0000-0002-4896-4592Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Ecology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:bacteria (other)· 3 Assay:whole-genome sequencing· 2 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Anne‐Marie Donachie· 1 shared Christiane Hertz‐FowleriD· 1 shared Christina A. CobboldiD· 1 shared Claire L. HarrisiD· 1 shared Damian William RivettiD· 1 shared Edith A. PaxtoniD· 1 shared Ellie HarrisoniD· 1 shared Heli VaikkineniD· 1 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperGenomics

Anne‐Marie Donachie

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Fungicide drives de novo evolution of multidrug resistance in the plant growth promoting rhizobacterium, Pseudomonas fluorescens

Matthew Kelbrick, James P. J. Hall, Siobhán O’Brien

This study shows that fungicide exposure drives multidrug resistance in Pseudomonas fluorescens, with dual stress reducing population survival.

Evolutionary Applications · Aug 1, 2026Peer-reviewedMicrobiology

The pQBR mercury resistance plasmids: a model set of sympatric environmental mobile genetic elements

Victoria T Orr, Ellie Harrison, Damian William Rivett, Rosanna C. T. Wright, James P. J. Hall

This study analyzes 26 mercury resistance plasmids from Pseudomonas spp., revealing their genetic diversity, transposon-driven evolution, and ability to mobilize chromosomal traits.

Microbial Genomics · Jul 22, 2026Peer-reviewedMicrobiology

Species interactions determine plasmid persistence in a 3-member bacterial community

Kaitlin A. Schaal, Ying‐Jie Wang, Johannes Nauta, Manlio De Domenico, Shai Pilosof, James P. J. Hall

This study shows bacterial interactions drive community responses to environmental changes more than plasmid dynamics in a three-member bacterial community.

bioRxiv · May 31, 2025 · PreprintEcology

Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections

Siddharth Jayaraman, Claire L. Harris, Edith A. Paxton, Anne‐Marie Donachie, Heli Vaikkinen, Richard McCulloch, James P. J. Hall, John G. Kenny, Luca Lenzi, Christiane Hertz‐Fowler, Christina A. Cobbold, Richard E. Reeve, Tom Michoel, Liam J. Morrison

This study uses long-read sequencing to analyze VSG diversity in T. brucei infections, revealing higher expressed diversity and early mosaic gene formation than previously observed.

PLoS neglected tropical diseases · Apr 3, 2019Peer-reviewedGenomics