Olivier Lespinet

Interspecies Differential Gene Expression Analysis with Regularized Phylogenetic Linear Models

This paper introduces phyloDE, a method for interspecies differential gene expression analysis that controls FDR and identifies more DE genes with consistent cis-regulatory changes.

SYNTERUPTOR: mining genomic islands for non-classical specialised metabolite gene clusters

SYNTERUPTOR identifies genomic islands containing specialised metabolite gene clusters in microbial genomes, detecting clusters missed by existing tools.

Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework

This paper benchmarks differential gene expression analysis methods for inter-species RNA-Seq data using a phylogenetic simulation framework to evaluate their performance across species.