Author

Johnny Kim

Johannes Gutenberg University MainzORCID 0000-0002-5226-5460Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Organism:human· 2 Organism:mouse· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Carsten Tobias KuenneiD· 2 shared Darko BosnakovskiiD· 2 shared Felipe F. LüttmanniD· 2 shared Mario LoosoiD· 2 shared Mette Skou BentseniD· 2 shared Michael KybaiD· 2 shared Alessandro MagliiD· 1 shared Anastasiia PetrovaiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersDevelopmental Biology

Carsten Tobias KuenneORCID

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3 papers

Recent·Most cited

Developmental BiologyNature GeneticsPeer-reviewedMar 20, 2024

The homeobox transcription factor DUXBL controls exit from totipotency

María Vega-Sendino, Felipe F. Lüttmann, Teresa Olbrich…·Sergio Ruiz

This study identifies DUXBL as a key factor promoting the silencing of the 2C transcriptional program during exit from totipotency.

37 citationstop 4%

mousebulk RNA-seq

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Molecular BiologyiSciencePeer-reviewedSep 2, 2023

Antagonism among DUX family members evolved from an ancestral toxic single homeodomain protein

Darko Bosnakovski, Erik A. Toso, Elizabeth T. Ener…·Michael Kyba

The paper investigates the functional relationships among DUX family members, showing that DUXA acts as a competitive inhibitor of DUX4 and shares target gene overlap with it.

19 citations

humanplant (other)

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BioinformaticsNature CommunicationsPeer-reviewedAug 26, 2020

Beyond accessibility: ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation

Mette Skou Bentsen, Philipp Goymann, Hendrik Schultheis…·Mario Looso

TOBIAS enables genome-wide analysis of TF binding dynamics using ATAC-seq data, revealing complex TF interactions during zygotic genome activation in humans and mice.

697 citationstop 1%

𝕏 PostBluesky