Author

Joshua W. M. Theisen

Baylor College of MedicineORCID 0000-0002-6267-5391Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Alyssa BlackburniD· 1 shared Andreas GnirkeiD· 1 shared Austin C. Steward· 1 shared Aviva Presser AideniD· 1 shared Bhairab N. SinghiD· 1 shared Daniel J. GarryiD· 1 shared David WeisziD· 1 shared Demetris YannopoulosiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperGenomics

Alyssa BlackburnORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

GenomicsPLoS ONEPeer-reviewedNov 30, 2023

A rapid, low cost, and highly sensitive SARS-CoV-2 diagnostic based on whole genome sequencing

Per A. Adastra, Neva C. Durand, Namita Mitra…·Aviva Presser Aiden

This paper introduces a low-cost, high-throughput method for SARS-CoV-2 detection using whole genome sequencing, achieving high sensitivity and accuracy comparable to clinical tests.

37 citations

viruswhole-genome sequencing

𝕏 PostBluesky

Developmental BiologybioRxivPreprintJul 16, 2022

Frem1 activity regulated by Sonic Hedgehog signaling in the cranial neural crest mesenchyme guides midfacial morphogenesis

Matthew Tomas McLaughlin, Miranda R. Sun, Tyler G. Beames…·Robert J. Lipinski

This study identifies Frem1 as a target of Sonic Hedgehog signaling in cranial neural crest cells, showing its role in midfacial morphogenesis and face shape variation.

DOI 10.1101/2022.07.16.500318

mousestatistical model

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BioinformaticsbioRxivPreprintFeb 7, 2019

A novel algorithm for the collective integration of single cell RNA-seq during embryogenesis

Wuming Gong, Bhairab N. Singh, Pruthvi Shah…·Daniel J. Garry

This paper introduces a novel algorithm to integrate heterogeneous temporal scRNA-seq datasets and reconstruct lineage trajectories, identifying Ebf1 as a key transcription factor for mouse endothelial development.

3 citations

mousescRNA-seq

𝕏 PostBluesky