Andreas Gnirke

This study shows how ETBF reprograms host metabolism to create an oxidative niche that supports its growth in the inflamed gut.

This study identifies distinct E. coli transcriptional profiles in the guts of recurrent UTI sufferers using a novel pangenome hybrid selection method.

This paper reports the 3D genome architecture of a 52,000-year-old woolly mammoth using a novel method, revealing conserved epigenetic features across elephantids.

The paper compares the genomes of pathogenic and non-pathogenic Cryptococcus species with related Kwoniella species, revealing gene gains/losses and chromosome fusion mechanisms linked to pathogenesis.

This paper introduces a low-cost, high-throughput method for SARS-CoV-2 detection using whole genome sequencing, achieving high sensitivity and accuracy comparable to clinical tests.

The paper identifies DNA methylation as a key mechanism for maintaining monoallelic expression on autosomes and reveals its tunable control of allele-specific expression.

The paper introduces CATCH, a method for designing compact and scalable probe sets to enhance metagenomic sequencing sensitivity, demonstrating improved viral genome recovery and diversity preservation.

The paper introduces Hi-Culfite, a method combining Hi-C and WGBS to study chromatin contacts and DNA methylation together, revealing context-sensitive methylation patterns.

This study sequenced 110 Zika virus genomes from 10 countries, revealing rapid expansion in Brazil, multiple introductions into other regions, and undetected circulation before confirmed cases.

This study analyzes 1600 Ebola virus genomes to show viral spread followed a gravity model, with cross-border transmission before border closures contributing to an international epidemic.